Package: INLA 25.04.10

Havard Rue

INLA: Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations

Full Bayesian analysis of latent Gaussian models using Integrated Nested Laplace Approximaxion. It is a front-end to the inla-program.

Authors:Havard Rue [cre, aut], Finn Lindgren [aut], Elias Teixeira Krainski [aut], Sara Martino [ctb], Haakon Bakka [ctb], Daniel Simpson [ctb], Andrea Riebler [ctb], Geir-Arne Fuglstad [ctb], Cristian Chiuchiolo [ctb]

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INLA.pdf |INLA.html✨
INLA/json (API)
NEWS

# Install 'INLA' in R:
install.packages('INLA', repos = c('https://test.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hrue/r-inla/issues

Datasets:
  • BivMetaAnalysis - Bivariate Meta Analysis
  • Cancer - ~~ data name/kind ... ~~
  • Drivers - Time series with seasonal effect
  • Epil - Repeated measures on Poisson counts
  • Germany - Disease Mapping
  • Kidney - Kidney infection data
  • Leuk - The Leukemia data
  • Munich - The Munich rent data
  • Oral - ~~ data name/kind ... ~~
  • PRborder - The PRborder data
  • PRprec - The PRprec data
  • SPDEtoy - Toy simulated data set for the SPDE tutorial
  • Salm - Extra-Poisson variation in dose-response study
  • Scotland - Conditional Autoregressive (CAR) model for disease mapping
  • Seeds - Factorial design
  • Surg - Surgical: Institutional ranking
  • SurvSim - Survival data
  • Tokyo - Binomial time series
  • Zambia - Semiparametric regression
  • nwEngland - The North West England map

On CRAN:

Conda:

inlalatentgaussianmodels

10.57 score 101 stars 6 packages 4.4k scripts 369 exports 33 dependencies

Last updated 5 days ago from:927173fe0d. Checks:8 ERROR, 2 OK. Indexed: no.

TargetResultTotal time
linux-devel-x86_64ERROR330
source / vignettesERROR412
linux-release-x86_64ERROR317
macos-release-arm64ERROR230
macos-oldrel-arm64ERROR262
windows-develERROR262
windows-releaseERROR254
windows-oldrelERROR266
wasm-releaseOK192
wasm-oldrelOK450

Exports:as.inla.mdataas.inla.mesh.segmentas.inla.survcontrol.bgevcontrol.computecontrol.expertcontrol.familycontrol.fixedcontrol.gcpocontrol.groupcontrol.hazardcontrol.inlacontrol.lincombcontrol.linkcontrol.lp.scalecontrol.mixcontrol.modecontrol.numacontrol.pardisocontrol.pomcontrol.predictorcontrol.scopycontrol.semcontrol.stilescontrol.taucscontrol.updatecontrol.vbctrl_checkctrl_classctrl_defaultctrl_objectctrl_typectrl_updateextract.groupsfinlaINLAinla.1djmarginalinla.agaussianinla.ar.pacf2acfinla.ar.pacf2phiinla.ar.phi2acfinla.ar.phi2pacfinla.as.CRS.listinla.as.CRSargs.listinla.as.dgTMatrixinla.as.list.CRSinla.as.list.CRSargsinla.as.sparseinla.as.wkt_tree.wktinla.as.wkt.wkt_treeinla.barrier.feminla.barrier.pcmaterninla.barrier.polygoninla.barrier.qinla.binary.installinla.cgeneric.defineinla.cgeneric.qinla.changeloginla.collect.resultsinla.compare.resultsinla.contour.segmentinla.coxphinla.cpoinla.CRSinla.crs_get_ellipsoid_radiusinla.crs_get_lengthunitinla.crs_get_wktinla.crs_is_geocentinla.crs_set_ellipsoid_radiusinla.crs_set_lengthunitinla.CRSargsinla.cutinla.dBindinla.debug.graphinla.delaunayinla.dev.newinla.diameterinla.dmarginalinla.docinla.dryruninla.emarginalinla.external.libinla.extract.elinla.fgninla.fmesher.smorginla.generate.colorsinla.geobugs2inlainla.get.inlaEnvinla.getOptioninla.graph2matrixinla.groupinla.group.cvinla.has_PROJ6inla.hpdmarginalinla.hyperparinla.hyperpar.sampleinla.identical.CRSinla.idxinla.iidkd.sampleinla.is.marginalinla.jp.defineinla.knmodelsinla.knmodels.sampleinla.ks.plotinla.lattice2nodeinla.lattice2node.mappinginla.likelihoodinla.link.cauchitinla.link.cclogloginla.link.cgevitinla.link.clogloginla.link.gevitinla.link.identityinla.link.invalidinla.link.invcauchitinla.link.invcclogloginla.link.invcgevitinla.link.invclogloginla.link.inverseinla.link.invgevitinla.link.invidentityinla.link.invinvalidinla.link.invinverseinla.link.invloginla.link.invlogitinla.link.invlogloginla.link.invnegloginla.link.invprobitinla.link.invqpoissoninla.link.invrobitinla.link.invsninla.link.invtaninla.link.invtan.piinla.link.loginla.link.logitinla.link.logloginla.link.negloginla.link.probitinla.link.robitinla.link.sninla.link.taninla.link.tan.piinla.list.modelsinla.loadinla.make.lincombinla.make.lincombsinla.matern.covinla.matern.cov.s2inla.matrix2graphinla.matrix2vectorinla.mdatainla.mergeinla.mesh.1dinla.mesh.1d.Ainla.mesh.1d.baryinla.mesh.1d.feminla.mesh.2dinla.mesh.assessmentinla.mesh.basisinla.mesh.boundaryinla.mesh.componentsinla.mesh.createinla.mesh.create.helperinla.mesh.derivinla.mesh.feminla.mesh.interiorinla.mesh.latticeinla.mesh.mapinla.mesh.map.liminla.mesh.projectinla.mesh.projectorinla.mesh.queryinla.mesh.segmentinla.mmarginalinla.modelsinla.nmix.lambda.fittedinla.node2latticeinla.node2lattice.mappinginla.nonconvex.hullinla.nonconvex.hull.basicinla.over_sp_meshinla.pardisoinla.pardiso.checkinla.pc.ar.dpacfinla.pc.ar.rpacfinla.pc.cormat.dim2pinla.pc.cormat.dthetainla.pc.cormat.p2diminla.pc.cormat.permuteinla.pc.cormat.r2Rinla.pc.cormat.R2rinla.pc.cormat.r2thetainla.pc.cormat.R2thetainla.pc.cormat.rthetainla.pc.cormat.theta2rinla.pc.cormat.theta2Rinla.pc.dalphawinla.pc.dcor0inla.pc.dcor1inla.pc.ddofinla.pc.dgammainla.pc.dgammacountinla.pc.dgevtailinla.pc.dprecinla.pc.dsninla.pc.dvm0inla.pc.dvminfinla.pc.multvar.h.defaultinla.pc.multvar.simplex.dinla.pc.multvar.simplex.rinla.pc.multvar.sphere.dinla.pc.multvar.sphere.rinla.pc.palphawinla.pc.pcor0inla.pc.pcor1inla.pc.pgammainla.pc.pgammacountinla.pc.pgevtailinla.pc.pprecinla.pc.psninla.pc.pvm0inla.pc.pvminfinla.pc.qalphawinla.pc.qcor0inla.pc.qcor1inla.pc.qgammainla.pc.qgammacountinla.pc.qgevtailinla.pc.qprecinla.pc.qsninla.pc.qvm0inla.pc.qvminfinla.pc.ralphawinla.pc.rcor0inla.pc.rcor1inla.pc.rgammainla.pc.rgammacountinla.pc.rgevtailinla.pc.rprecinla.pc.rsninla.pc.rvm0inla.pc.rvminfinla.pininla.pmarginalinla.posterior.sampleinla.posterior.sample.evalinla.priors.usedinla.pruneinla.qdelinla.qgetinla.qinvinla.qloginla.qmarginalinla.qnukeinla.qreorderinginla.qsampleinla.qsolveinla.qstatinla.rbind.data.framesinla.read.graphinla.remoteinla.reorderingsinla.reruninla.rgeneric.ar1.modelinla.rgeneric.ar1.model.optinla.rgeneric.defineinla.rgeneric.iid.modelinla.rgeneric.qinla.rgeneric.wrapperinla.rjmarginalinla.rjmarginal.evalinla.rmarginalinla.row.kroninla.rprior.defineinla.scale.modelinla.scale.model.internalinla.scopy.defineinla.scopy.summaryinla.set.control.bgev.defaultinla.set.control.compute.defaultinla.set.control.expert.defaultinla.set.control.family.defaultinla.set.control.fixed.defaultinla.set.control.gcpo.defaultinla.set.control.group.defaultinla.set.control.hazard.defaultinla.set.control.inla.defaultinla.set.control.lincomb.defaultinla.set.control.link.defaultinla.set.control.lp.scale.defaultinla.set.control.mix.defaultinla.set.control.mode.defaultinla.set.control.pardiso.defaultinla.set.control.pom.defaultinla.set.control.predictor.defaultinla.set.control.scopy.defaultinla.set.control.sem.defaultinla.set.control.stiles.defaultinla.set.control.taucs.defaultinla.set.control.update.defaultinla.set.control.vb.defaultinla.setOptioninla.simplify.curveinla.smarginalinla.sp_get_crsinla.sp2segmentinla.spde.make.Ainla.spde.make.block.Ainla.spde.make.indexinla.spde.modelsinla.spde.precisioninla.spde.resultinla.spde.sampleinla.spde1.createinla.spde1.imaterninla.spde1.materninla.spde1.matern.oscinla.spde1.modelsinla.spde1.precisioninla.spde1.resultinla.spde2.genericinla.spde2.materninla.spde2.matern.sd.basisinla.spde2.modelsinla.spde2.pcmaterninla.spde2.precisioninla.spde2.resultinla.spde2.theta2phi0inla.spde2.theta2phi1inla.spde2.theta2phi2inla.spTransforminla.spyinla.ssh.copy.idinla.stackinla.stack.Ainla.stack.compressinla.stack.datainla.stack.indexinla.stack.joininla.stack.LHSinla.stack.mexpandinla.stack.remove.unusedinla.stack.responseinla.stack.RHSinla.stack.suminla.survinla.tjmarginalinla.tmarginalinla.unpininla.updateinla.upgradeinla.vector2matrixinla.versioninla.wkt_get_ellipsoid_radiusinla.wkt_get_lengthunitinla.wkt_is_geocentinla.wkt_predefinla.wkt_set_ellipsoid_radiusinla.wkt_set_lengthunitinla.wkt_tree_get_iteminla.wkt_tree_set_iteminla.wkt_unit_paramsinla.write.graphinla.zmarginalis.inla.mdatais.inla.survmeshbuilderparam2.matern.orig

Dependencies:classclassIntcliDBIdplyre1071fmeshergenericsglueKernSmoothlatticelifecyclemagrittrMASSMatrixMatrixModelspillarpkgconfigproxyR6Rcpprlangs2sfspsplancstibbletidyselectunitsutf8vctrswithrwk

Readme and manuals

Help Manual

Help pageTopics
INLAINLA-package INLA
Convert 'sp' objects to 'inla.mesh.segment' objects.as.inla.mesh.segment inla.sp2segment
Bivariate Meta AnalysisBivMetaAnalysis
~~ data name/kind ... ~~Cancer
cgeneric modelscgeneric cgeneric.define cgeneric.q inla.cgeneric.define inla.cgeneric.q
control.bgevcontrol.bgev inla.set.control.bgev.default
control.computecontrol.compute inla.set.control.compute.default
control.expertcontrol.expert inla.set.control.expert.default
control.familycontrol.family inla.set.control.family.default
control.fixedcontrol.fixed inla.set.control.fixed.default
control.gcpocontrol.gcpo inla.set.control.gcpo.default
control.groupcontrol.group inla.set.control.group.default
control.hazardcontrol.hazard inla.set.control.hazard.default
control.inlacontrol.inla inla.set.control.inla.default
control.lincombcontrol.lincomb inla.set.control.lincomb.default
control.linkcontrol.link inla.set.control.link.default
control.lp.scalecontrol.lp.scale inla.set.control.lp.scale.default
control.mixcontrol.mix inla.set.control.mix.default
control.modecontrol.mode inla.set.control.mode.default
control.numacontrol.numa
control.pardisocontrol.pardiso inla.set.control.pardiso.default
control.pomcontrol.pom inla.set.control.pom.default
control.predictorcontrol.predictor inla.set.control.predictor.default
control.scopycontrol.scopy inla.set.control.scopy.default
control.semcontrol.sem inla.set.control.sem.default
control.stilescontrol.stiles inla.set.control.stiles.default
control.taucscontrol.taucs inla.set.control.taucs.default
control.updatecontrol.update inla.set.control.update.default
control.fixedcontrol.vb inla.set.control.vb.default
Handling CRS/WKTcrs_wkt inla.crs_get_ellipsoid_radius inla.crs_get_lengthunit inla.crs_get_wkt inla.crs_is_geocent inla.crs_set_ellipsoid_radius inla.crs_set_lengthunit inla.wkt_get_ellipsoid_radius inla.wkt_get_lengthunit inla.wkt_is_geocent inla.wkt_set_ellipsoid_radius inla.wkt_set_lengthunit inla.wkt_unit_params
Group-wise model criticism using node-splittingcut inla.cut
Debug a graph-filedebug.graph inla.debug.graph
Time series with seasonal effectDrivers
Do a dryrun to extract some internal information upfrontdryrun inla.dryrun
Repeated measures on Poisson countsEpil
Extract tagged boundary/internal segments.extract.groups extract.groups.inla.mesh.segment
Define general Gaussian models in the INLA formulaf
Return the coefficients in the 3-component AR(1) mixture representing FGN(H)fgn inla.fgn
Disease MappingGermany
INLA utility functionsgeobugs2inla graph.convert inla.geobugs2inla
Construct a neighbour-matrix from a 'graph'graph.matrix graph2matrix inla.graph2matrix inla.matrix2graph inla.spy spy
Convert indexesidx inla.idx
Bayesian analysis of structured additive modelsinla
inla estimation object classinla-class
Aggregate Gaussian into an equivalent observationagaussian aggregate.gaussian inla.agaussian
Convert between parameterizations for the AR(p) modelar.pacf2acf ar.pacf2phi ar.phi2acf ar.phi2pacf inla.ar.pacf2acf inla.ar.pacf2phi inla.ar.phi2acf inla.ar.phi2pacf pacf2acf pacf2phi phi2acf phi2pacf
Convert a matrix or sparse matrix into the sparse formate used by INLAinla.as.dgTMatrix inla.as.sparse
Internal WKT handlinginla.as.wkt.wkt_tree inla.as.wkt_tree.wkt inla.wkt_tree_get_item inla.wkt_tree_set_item
Functions for defining the Barrier modelsbarrier barrier.fem barrier.pcmatern barrier.polygon barrier.q inla.barrier inla.barrier.fem inla.barrier.pcmatern inla.barrier.polygon inla.barrier.q
Install alternative binary builds.binary.install inla.binary.install
inla.changelogchangelog inla.changelog inla.changes
Collect results from a inla-callcollect.results inla.collect.results
Convert a Cox proportional hazard model into Poisson regressioncbind.data.frames coxph inla.coxph inla.rbind.data.frames
Improved estimates for the CPO/PIT-valuescpo.inla inla.cpo
Create a coordinate reference system objectinla.CRS inla.wkt_predef
Show expanded CRS argumentsinla.as.CRS.list inla.as.CRSargs.list inla.as.list.CRS inla.as.list.CRSargs inla.CRSargs
Opens a new deviceinla.dev.new
Diameter of a point setinla.diameter inla.diameter.default inla.diameter.inla.mesh inla.diameter.inla.mesh.1d inla.diameter.inla.mesh.lattice inla.diameter.inla.mesh.segment
View documentationinla.doc inla.inla.doc
Return the path to the cgeneric-library for a pre-compiled external packageinla.external.lib
Extract elements by matching name from container objects.inla.extract.el inla.extract.el.data.frame inla.extract.el.list inla.extract.el.matrix
Compute various mesh related quantities.inla.fmesher.smorg
Generate text RGB color specifications.inla.generate.colors
Return the internal environment used by INLAget.inlaEnv inla.get.inlaEnv
Group or cluster covariatesinla.group
Compute group.cv-valuesinla.group.cv
PROJ6 detectioninla.fallback_PROJ6 inla.has_PROJ6 inla.not_for_PROJ4 inla.not_for_PROJ6 inla.requires_PROJ6
Improved estimates for the hyperparameters (classic-mode only)hyperpar.inla inla.hyperpar
Produce samples from the approximated joint posterior for the hyperparametershyperpar.sample hyperpar.sampler inla.hyperpar.sample inla.hyperpar.sampler
Test CRS and inla.CRS for equalityinla.identical.CRS
Provide samples from the 'iidkd' component (experimental)iidkd.sample inla.iidkd.sample
Spacetime interaction modelsinla.knmodels knmodels
Spacetime interaction models sampler functioninla.knmodels.sample
Kolmogorov-Smirnov Test Plotsinla.ks.plot ks.plot
Providing functions for sampling new data, evaluating pdf, cdf, and quantiles for new data.inla.likelihood likelihood
List available model components, likelihoods, priors, etcinla.list.models list.models
Numerical evaluation of Matern and related covariance functions.inla.matern.cov inla.matern.cov.s2
Create an mdata-object for INLAas.inla.mdata inla.mdata is.inla.mdata mdata print.inla.mdata
Function space definition objects for 1D SPDE models.inla.mesh.1d inla.mesh.1d.fem
Mapping matrix for 1D meshesinla.mesh.1d.A inla.mesh.1d.bary
High-quality triangulationsinla.mesh.2d
Interactive mesh building and diagnosticsinla.mesh.assessment
Basis functions for inla.meshinla.mesh.basis
Constraint segment extraction for inla.meshinla.mesh.boundary inla.mesh.interior
Compute connected mesh subsetsinla.mesh.components
Low level function for high-quality triangulationsinla.delaunay inla.mesh inla.mesh.create
Directional derivative matrices for functions on meshes.inla.mesh.deriv
Finite element matricesinla.mesh.fem
Lattice grids for inla.meshinla.mesh.lattice
Coordinate mappings for 'inla.mesh' projections.inla.mesh.map inla.mesh.map.lim
Methods for projecting to/from an inla.meshinla.mesh.project inla.mesh.project.inla.mesh inla.mesh.project.inla.mesh.1d inla.mesh.project.inla.mesh.projector inla.mesh.projector inla.mesh.projector.inla.mesh inla.mesh.projector.inla.mesh.1d
High-quality triangulationsinla.mesh.query
Constraint segments for inla.meshinla.contour.segment inla.mesh.segment
Valid models in INLAinla.models
Estimate posterior distributions of fitted lambda valuesinla.nmix.fitted inla.nmix.lambda.fitted nmix.lambda.fitted
Nonconvex set extensions.inla.nonconvex.hull inla.nonconvex.hull.basic
Set and get global options for INLAinla.getOption inla.option inla.options inla.setOption
Check which mesh triangles are inside a polygoninla.over_sp_mesh
Control main thread pinning for INLA (experimental)inla.pin inla.unpin
Print priors usedinla.priors.used priors.used
Prune the INLA-packageinla.prune prune
Control and view a remote inla-queueinla.q inla.qdel inla.qget inla.qlog inla.qnuke inla.qstat print.inla.q summary.inla.q
Reorderings methods for sparse matricesinla.reorderings reorderings
Rerun an analysisinla.rerun rerun
Generate samples, and functions thereof, from an approximated posterior of a fitted modelinla.posterior.sample inla.posterior.sample.eval inla.sample posterior.sample posterior.sample.eval
Recursive curve simplification.inla.simplify.curve
Extract CRS informationinla.sp_get_crs
Observation/prediction matrices for mesh models.inla.spde.make.A
Observation matrices for mesh models.inla.spde.make.block.A
SPDE model index vector generationinla.spde.make.index
List SPDE models supported by inla.spde objectsinla.spde.models inla.spde1.models inla.spde2.models
Precision matrices for SPDE modelsinla.spde.precision inla.spde.precision.inla.spde1 inla.spde.precision.inla.spde2 inla.spde1.precision inla.spde2.precision
SPDE result extraction from INLA estimation resultsinla.spde.result inla.spde.result.inla.spde1 inla.spde.result.inla.spde2 inla.spde1.result inla.spde2.result
Sample from SPDE modelsinla.spde.sample inla.spde.sample.default inla.spde.sample.inla.spde
Old SPDE model objects for INLAinla.spde1 inla.spde1.create inla.spde1.imatern inla.spde1.matern inla.spde1.matern.osc
Generic spde2 model creation.inla.spde2 inla.spde2.generic
Matern SPDE model object for INLAinla.spde2.matern inla.spde2.theta2phi0 inla.spde2.theta2phi1 inla.spde2.theta2phi2
Approximate variance-compensating basis functionsinla.spde2.matern.sd.basis
Matern SPDE model object with PC prior for INLAinla.spde2.pcmatern
Wrapper method for 'fmesher::fm_transform'inla.spTransform
Setup remote computinginla.remote inla.ssh.copy.id ssh.copy.id
Data stacking for advanced INLA modelsinla.stack inla.stack.A inla.stack.compress inla.stack.data inla.stack.index inla.stack.join inla.stack.LHS inla.stack.remove.unused inla.stack.response inla.stack.RHS inla.stack.sum print.inla.data.stack
Create a Survival Object for INLAas.inla.surv inla.surv is.inla.surv plot.inla.surv print.inla.surv
Upgrade the INLA-packageinla.update inla.upgrade
Show the version of the INLA-packageinla.version version
Sample, transform and evaluate from a joint marginal approximation1djmarginal inla.1djmarginal inla.joint.marginal inla.joint.marginal.eval inla.rjmarginal inla.rjmarginal.eval inla.tjmarginal joint.marginal joint.marginal.eval print.inla.jmarginal print.summary.inla.jmarginal rjmarginal rjmarginal.eval summary.inla.jmarginal tjmarginal
Joint-prior modelsinla.jp.define jp jp.define
Kidney infection dataKidney
Functions to define mapping between a lattice and nodesinla.lattice2node inla.lattice2node.mapping inla.matrix2vector inla.node2lattice inla.node2lattice.mapping inla.vector2matrix lattice2node lattice2node.mapping matrix2vector node2lattice node2lattice.mapping vector2matrix
The Leukemia dataLeuk Leukemia
Draw 'inla.mesh.segment' objects.lines.inla.mesh.segment
Link functions in INLAinla.link inla.link.cauchit inla.link.ccloglog inla.link.cgevit inla.link.cloglog inla.link.gevit inla.link.identity inla.link.invalid inla.link.invcauchit inla.link.invccloglog inla.link.invcgevit inla.link.invcloglog inla.link.inverse inla.link.invgevit inla.link.invidentity inla.link.invinvalid inla.link.invinverse inla.link.invlog inla.link.invlogit inla.link.invloglog inla.link.invneglog inla.link.invprobit inla.link.invqpoisson inla.link.invrobit inla.link.invsn inla.link.invtan inla.link.invtan.pi inla.link.log inla.link.logit inla.link.loglog inla.link.neglog inla.link.probit inla.link.robit inla.link.sn inla.link.tan inla.link.tan.pi link
Create linear combinationsinla.make.lincomb inla.make.lincombs make.lincomb make.lincombs
Functions which operates on marginalsdmarginal emarginal hpdmarginal inla.dmarginal inla.emarginal inla.hpdmarginal inla.is.marginal inla.marginal inla.mmarginal inla.pmarginal inla.qmarginal inla.rmarginal inla.smarginal inla.tmarginal inla.zmarginal marginal mmarginal pmarginal qmarginal rmarginal smarginal zmarginal
Merge a mixture of 'inla'-objectsinla.merge merge.inla
Interactive mesh building and diagnosticsmeshbuilder
The Munich rent dataMunich
The North West England mapnwEngland
~~ data name/kind ... ~~Oral
Parameter settings for 'inla.spde2.matern' models.param2.matern.orig
Describe and check the PARDISO support in R-INLAinla.pardiso inla.pardiso.check pardiso
Utility functions for the PC prior for the 'alpha' parameter in the Weibull likelihoodinla.pc.alphaw inla.pc.dalphaw inla.pc.palphaw inla.pc.qalphaw inla.pc.ralphaw pc.alphaw pc.dalphaw pc.palphaw pc.qalphaw pc.ralphaw
Utility functions for the PC prior for a an AR(p) modelar.dpacf ar.rpacf inla.pc.ar inla.pc.ar.dpacf inla.pc.ar.rpacf pc.ar
Utility functions for the PC prior for correlation in AR(1)inla.pc.cor0 inla.pc.dcor0 inla.pc.pcor0 inla.pc.qcor0 inla.pc.rcor0 pc.cor0 pc.dcor0 pc.pcor0 pc.qcor0 pc.rcor0
Utility functions for the PC prior for correlation in AR(1)inla.pc.cor1 inla.pc.dcor1 inla.pc.pcor1 inla.pc.qcor1 inla.pc.rcor1 pc.cor1 pc.dcor1 pc.pcor1 pc.qcor1 pc.rcor1
Utility functions for the PC prior for a correlation matrixcormat.dim2p cormat.dtheta cormat.p2dim cormat.permute cormat.R2r cormat.r2R cormat.R2theta cormat.r2theta cormat.rtheta cormat.theta2R cormat.theta2r inla.pc.cormat inla.pc.cormat.dim2p inla.pc.cormat.dtheta inla.pc.cormat.p2dim inla.pc.cormat.permute inla.pc.cormat.R2r inla.pc.cormat.r2R inla.pc.cormat.R2theta inla.pc.cormat.r2theta inla.pc.cormat.rtheta inla.pc.cormat.theta2R inla.pc.cormat.theta2r pc.cormat
PC-prior for dof in a standardized Student-tinla.pc.ddof inla.pc.dof inla.pc.t pc.ddof pc.dof pc.t
Utility functions for the PC prior for 'Gamma(1/a, 1/a)'inla.pc.dgamma inla.pc.gamma inla.pc.pgamma inla.pc.qgamma inla.pc.rgamma pc.dgamma pc.gamma pc.pgamma pc.qgamma pc.rgamma
Utility functions for the PC prior for the 'gammacount' likelihoodinla.pc.dgammacount inla.pc.gammacount inla.pc.pgammacount inla.pc.qgammacount inla.pc.rgammacount pc.dgammacount pc.gammacount pc.pgammacount pc.qgammacount pc.rgammacount
Utility functions for the PC prior for the 'tail' parameter in the GEV likelihoodinla.pc.dgevtail inla.pc.gevtail inla.pc.pgevtail inla.pc.qgevtail inla.pc.rgevtail pc.dgevtail pc.gevtail pc.pgevtail pc.qgevtail pc.rgevtail
Multivariate PC priorsinla.pc.multvar inla.pc.multvar.h.default inla.pc.multvar.simplex inla.pc.multvar.simplex.d inla.pc.multvar.simplex.r inla.pc.multvar.sphere inla.pc.multvar.sphere.d inla.pc.multvar.sphere.r pc.multvar pc.multvar.h.default pc.multvar.simplex pc.multvar.simplex.d pc.multvar.simplex.r pc.multvar.sphere pc.multvar.sphere.d pc.multvar.sphere.r
Utility functions for the PC prior for the precisioninla.pc.dprec inla.pc.pprec inla.pc.prec inla.pc.qprec inla.pc.rprec pc.dprec pc.pprec pc.prec pc.qprec pc.rprec
Utility functions for the PC prior for 'skewness' in the skew-normal linkfunction and likelihoodinla.pc.dsn inla.pc.psn inla.pc.qsn inla.pc.rsn inla.pc.sn pc.dsn pc.psn pc.qsn pc.rsn pc.sn
Utility functions for the PC prior for the precisioninla.pc.dvm0 inla.pc.pvm0 inla.pc.qvm0 inla.pc.rvm0 inla.pc.vm0 pc.dvm0 pc.pvm0 pc.qvm0 pc.rvm0 pc.vm0
Utility functions for the PC prior for the concentration of von Mises distribution with point mass base modelinla.pc.dvminf inla.pc.pvminf inla.pc.qvminf inla.pc.rvminf inla.pc.vminf pc.dvminf pc.pvminf pc.qvminf pc.rvminf pc.vminf
Default INLA plottinginla.plot plot.inla
Draw a triangulation mesh objectplot.inla.mesh
Low level triangulation mesh plottingplot.inla.trimesh
The PRborder dataPRborder
Print an INLA fitprint.inla
The PRprec dataPRprec
Computes (parts of) the inverse of a SPD sparse matrixinla.qinv qinv
Compute the reordering using the GMRFLib implementationinla.qreordering qreordering
Generate samples from a GMRF using the GMRFLib implementationinla.qsample qsample
Solves linear SPD systemsinla.qsolve qsolve
Read and write a graph-objectinla.graph inla.read.graph inla.write.graph plot.inla.graph print.inla.graph.summary read.graph summary.inla.graph write.graph
rgeneric modelsinla.rgeneric.ar1.model inla.rgeneric.ar1.model.opt inla.rgeneric.define inla.rgeneric.iid.model inla.rgeneric.q inla.rgeneric.wrapper rgeneric rgeneric.ar1.model rgeneric.define rgeneric.iid.model rgeneric.q rgeneric.wrapper
Define prior in Rinla.rprior.define rprior rprior.define
Extra-Poisson variation in dose-response studySalm
Scale an intrinsic GMRF modelinla.scale.model inla.scale.model.internal scale.model
Get the parameterisation of the 'scopy' modelinla.scopy.define scopy.define
Computes the mean and stdev for the spline from 'scopy'inla.scopy.summary scopy.summary
Conditional Autoregressive (CAR) model for disease mappingScotland
Factorial designSeeds
toy simulated data set for the SPDE tutorialSPDEtoy
Summary for a INLA fitprint.summary.inla summary.inla summary.surv.inla
Summarizing triangular mesh objectsprint.summary.inla.mesh summary.inla.mesh
Surgical: Institutional rankingSurg
Survival dataSurvSim
Binomial time seriesTokyo
Semiparametric regressionZambia