igraph - Network Analysis and Visualization
Routines for simple graphs and network analysis. It can handle large graphs very well and provides functions for generating random and regular graphs, graph visualization, centrality methods and much more.
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complex-networksgraph-algorithmsgraph-theorymathematicsnetwork-analysisnetwork-graphfortranlibxml2glpkopenblascpp
20.68 score 599 stars 2.0k dependents 33k scripts 381k downloadsdata.table - Extension of `data.frame`
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
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16.56 score 3 stars 4.8k dependents 284k scripts 766k downloadslater - Utilities for Scheduling Functions to Execute Later with Event Loops
Executes arbitrary R or C functions some time after the current time, after the R execution stack has emptied. The functions are scheduled in an event loop.
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event-loopcpp
16.29 score 147 stars 2.7k dependents 308 scripts 535k downloads
duckdb - DBI Package for the DuckDB Database Management System
The DuckDB project is an embedded analytical data management system with support for the Structured Query Language (SQL). This package includes all of DuckDB and an R Database Interface (DBI) connector.
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databaseduckdbolapcpp
14.02 score 180 stars 67 dependents 2.1k scripts 30k downloads
mirai - Minimalist Async Evaluation Framework for R
Designed for simplicity, a 'mirai' evaluates an R expression asynchronously in a parallel process, locally or distributed over the network. Modern networking and concurrency, built on 'nanonext' and 'NNG', ensures reliable scheduling over fast inter-process communications or TCP/IP secured by TLS. Launch remote resources via SSH or cluster managers for distributed computing. Scales efficiently to millions of tasks over thousands of connections, requiring no storage on the file system due to its inherently queued architecture. Innovative features include event-driven promises, asynchronous parallel map, and seamless serialization of otherwise non-exportable reference objects.
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asyncasynchronous-tasksconcurrencydistributed-computinghigh-performance-computingparallel-computing
13.00 score 273 stars 27 dependents 211 scripts 23k downloads
cmdstanr - R Interface to 'CmdStan'
A lightweight interface to 'Stan' <https://mc-stan.org>. The 'CmdStanR' interface is an alternative to 'RStan' that calls the command line interface for compilation and running algorithms instead of interfacing with C++ via 'Rcpp'. This has many benefits including always being compatible with the latest version of Stan, fewer installation errors, fewer unexpected crashes in RStudio, and a more permissive license.
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bayesbayesianmarkov-chain-monte-carlomaximum-likelihoodmcmcstanvariational-inference
12.42 score 154 stars 9 dependents 7.4k scriptsfmesher - Triangle Meshes and Related Geometry Tools
Generate planar and spherical triangle meshes, compute finite element calculations for 1-, 2-, and 3-dimensional flat and curved manifolds with associated basis function spaces, methods for lines and polygons, and transparent handling of coordinate reference systems and coordinate transformation, including 'sf' and 'sp' geometries. The core 'fmesher' library code was originally part of the 'INLA' package, and implements parts of "Triangulations and Applications" by Hjelle and Daehlen (2006) <doi:10.1007/3-540-33261-8>.
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cpp
11.93 score 18 stars 27 dependents 434 scripts 13k downloads
crew - A Distributed Worker Launcher Framework
In computationally demanding analysis projects, statisticians and data scientists asynchronously deploy long-running tasks to distributed systems, ranging from traditional clusters to cloud services. The 'NNG'-powered 'mirai' R package by Gao (2023) <doi:10.5281/zenodo.7912722> is a sleek and sophisticated scheduler that efficiently processes these intense workloads. The 'crew' package extends 'mirai' with a unifying interface for third-party worker launchers. Inspiration also comes from packages. 'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>, 'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>, 'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>), and 'batchtools' by Lang, Bischel, and Surmann (2017) <doi:10.21105/joss.00135>.
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high-performance-computing
11.92 score 145 stars 3 dependents 332 scripts 6.1k downloadsadbcdrivermanager - 'Arrow' Database Connectivity ('ADBC') Driver Manager
Provides a developer-facing interface to 'Arrow' Database Connectivity ('ADBC') for the purposes of driver development, driver testing, and building high-level database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses 'Arrow' for result sets and query parameters.
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arrowdatabasecpp
11.81 score 481 stars 6 dependents 88 scripts 3.8k downloadsINLA - Full Bayesian Analysis of Latent Gaussian Models using Integrated Nested Laplace Approximations
Full Bayesian analysis of latent Gaussian models using Integrated Nested Laplace Approximaxion. It is a front-end to the inla-program.
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inlalatentgaussianmodels
10.56 score 108 stars 5 dependents 4.6k scripts
nanonext - NNG (Nanomsg Next Gen) Lightweight Messaging Library
R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is a socket library for reliable, high-performance messaging over in-process, IPC, TCP, WebSocket and secure TLS transports. Implements 'Scalability Protocols', a standard for common communications patterns including publish/subscribe, request/reply and service discovery. As its own threaded concurrency framework, provides a toolkit for asynchronous programming and distributed computing. Intuitive 'aio' objects resolve automatically when asynchronous operations complete, and synchronisation primitives allow R to wait upon events signalled by concurrent threads.
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concurrencyhttpsipc-messagemessaging-librarynngrpcsocket-communicationsynchronization-primitivestcp-protocolwebsocketmbedtls
10.10 score 67 stars 31 dependents 34 scripts 25k downloadspolars - R Bindings for the 'polars' Rust Library
Lightning-fast 'DataFrame' library written in 'Rust'. Convert R data to 'Polars' data and vice versa. Perform fast, lazy, larger-than-memory and optimized data queries. 'Polars' is interoperable with the package 'arrow', as both are based on the 'Apache Arrow' Columnar Format.
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arrowpolarsrust
9.92 score 524 stars 2 dependents 255 scripts 4 downloadsrJava - Low-Level R to Java Interface
Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
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openjdk
9.77 score 4 stars 245 dependents 2.9k scripts 69k downloadshttpgd - A 'HTTP' Server Graphics Device
A graphics device for R that is accessible via network protocols. This package was created to make it easier to embed live R graphics in integrated development environments and other applications. The included 'HTML/JavaScript' client (plot viewer) aims to provide a better overall user experience when dealing with R graphics. The device asynchronously serves graphics via 'HTTP' and 'WebSockets'.
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cpp
8.77 score 459 stars 358 scripts 203 downloadsadbcflightsql - 'Arrow' Database Connectivity ('ADBC') 'FlightSQL' Driver
Provides a developer-facing interface to the 'Arrow' Database Connectivity ('ADBC') 'FlightSQL' driver for the purposes of building high-level database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is an API standard for database access libraries that uses 'Arrow' for result sets and query parameters.
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arrowdatabasegolang
8.03 score 482 stars 2 scripts
tidypolars - More Efficient Tidyverse Code, Using Polars in the Background
Polars is a cross-language tool for manipulating very large data. However, one drawback is that the R implementation has a syntax that will look odd to many R users who are not used to Python syntax. The objective of tidypolars is to improve the ease-of-use of Polars in R by providing tidyverse syntax to polars.
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7.99 score 215 stars 41 scriptssecretbase - Cryptographic Hash, Extendable-Output and Base64 Functions
Fast and memory-efficient streaming hash functions and base64 encoding / decoding. Hashes strings and raw vectors directly. Stream hashes files which can be larger than memory, as well as in-memory objects through R's serialization mechanism. Implementations include the SHA-256, SHA-3 and 'Keccak' cryptographic hash functions, SHAKE256 extendable-output function (XOF), and 'SipHash' pseudo-random function.
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base64cryptographic-hash-functionsextendable-output-functionskeccaksha256sha3shake256siphash
7.84 score 12 stars 25 dependents 12 scripts 12k downloads
ichimoku - Visualization and Tools for Ichimoku Kinko Hyo Strategies
An implementation of 'Ichimoku Kinko Hyo', also commonly known as 'cloud charts'. Static and interactive visualizations with tools for creating, backtesting and development of quantitative 'ichimoku' strategies. As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement on candlestick charting, originating from Japan and now in widespread use in technical analysis worldwide. Translating as 'one-glance equilibrium chart', it allows the price action and market structure of financial securities to be determined 'at-a-glance'. Incorporates an interface with the OANDA fxTrade API <https://developer.oanda.com/> for retrieving historical and live streaming price data for major currencies, metals, commodities, government bonds and stock indices.
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ichimokuichimoku-cloudoandaquantitative-finance
7.30 score 35 stars 41 scripts 878 downloadsstring2path - Rendering Font into 'data.frame'
Extract glyph information from font data, and translate the outline curves to flattened paths or tessellated polygons. The converted data is returned as a 'data.frame' in easy-to-plot format.
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rustcargo
7.30 score 99 stars 12 scripts 24k downloadsSBC - Simulation Based Calibration for rstan/cmdstanr models
SBC helps perform Simulation Based Calibration on Bayesian models. SBC lets you check for bugs in your model code and/or algorithm that fits the model. SBC focuses on models built with 'Stan' <https://mc-stan.org>, but can support other modelling languages as well.
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diagnosticssimulation-based-inference
5.24 score 61 stars 115 scripts
stantargets - Targets for Stan Workflows
Bayesian data analysis usually incurs long runtimes and cumbersome custom code. A pipeline toolkit tailored to Bayesian statisticians, the 'stantargets' R package leverages 'targets' and 'cmdstanr' to ease these burdens. 'stantargets' makes it super easy to set up scalable Stan pipelines that automatically parallelize the computation and skip expensive steps when the results are already up to date. Minimal custom code is required, and there is no need to manually configure branching, so usage is much easier than 'targets' alone. 'stantargets' can access all of 'cmdstanr''s major algorithms (MCMC, variational Bayes, and optimization) and it supports both single-fit workflows and multi-rep simulation studies. For the statistical methodology, please refer to 'Stan' documentation (Stan Development Team 2020) <https://mc-stan.org/>.
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bayesianhigh-performance-computingmaker-targetopiareproducibilitystanstatisticstargets
4.98 score 50 stars 190 scriptsglaredb - R Bindings for 'GlareDB'
R bindings for 'GlareDB', an analytical database based on 'Apache Arrow' and 'Apache DataFusion' that can connect to various data sources and execute queries.
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arrowglaredbrustsql
3.68 score 4 stars 6 scriptstargetsketch - Create and Visualize Targets Pipelines
A Shiny app for creating and visualizing targets pipelines (<https://github.com/wlandau/targets>). Simply supply a _targets.R file with the pipeline and supporting functions, and the app shows a dependency graph and manifest.
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data-sciencehigh-performance-computingpipelinereproducibilityshinytargetsworkflow
3.41 score 17 stars 1 scripts
tidytensor - TidyTensor
Provides functions for working with tensors (vectors, matrices, or multidimensional arrays) as named hierarchical data structures.
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2.30 score 4 stars 1 scripts